Elucidating organ-specific metabolic toxicity chemistry from electrochemiluminescent enzyme/DNA arrays and bioreactor bead-LC-MS/MS† †Electronic supplementary information (ESI) available: Experimental details, 9 additional figures and 5 tables documenting system characterization, and raw array and LC-MS/MS results. See DOI: 10.1039/c4sc03401e Click here for additional data file.
نویسندگان
چکیده
[Ru(bpy)2(PVP)10] (RuPVP (bpy = 2,2-bipyridyl; PVP = poly(4-vinylpyridine)) was synthesized and characterized as described previously. Styrene (MW= 104.15), 2Acetylaminofluorene (2-AAF, MW= 223.27), 4-(Methylnitrosamino)-1-(3-pyridyl)-1-butanone (NNK, MW= 207.23), poly(diallyldimethylammonium chloride) (PDDA, average Mw= 100,000200,000), poly(sodium 4-styrenesulfonate) (PSS, average MW= 70000), calf thymus DNA (Type I) and all other chemicals were from Sigma. Pooled male human liver microsomes (Liver, 20 mg mL in 250 mM sucrose) contained (a) 20 mg mL total protein content , (b) total cyt P450 content of 340 pmol mg of protein using the method of Omura and Sato, baculovirus-insect cell expressed cyt P450 1B1 supersomes (cyt P450 1B1), 4.5 mg/ml in 100mM potassium phosphate buffer of pH 7.4 with representative total cyt P450 content of 220 pmol mg of protein; baculovirus-insect cell expressed cyt P450 1A1 supersomes (cyt P450 1A1), 5.0 mg/ml in 100mM potassium phosphate buffer of pH 7.4 with representative total cyt P450 content of 120 pmol mg of protein; baculovirus-insect cell expressed cyt P450 3A4 supersomes (cyt P450 3A4), 5.0 mg/ml in 100mM potassium phosphate buffer of pH 7.4 with representative total cyt P450 content of 200 pmol mg of protein; and baculovirus-insect cell expressed cyt P450 3A5 supersomes (cyt P450 3A5), 14 mg/ml in 100mM potassium phosphate buffer of pH 7.4 with representative total cyt P450 content of 1000 pmol mg of protein; were from BD Gentest (Woburn, MA). Human lung microsomes (Lung), 10 mg mL in 250 mM sucrose; Human intestinal microsomes (Intestine), 20 mg mL in 250 mM sucrose; Human kidney microsomes (Kidney), 10 mg mL in 250 mM sucrose; Human liver cytosol (HLC), 20 mg mL in 50 mM Tris 150 mM KCl, 2 mM EDTA of pH 7.5; Human lung cytosol (HLuC), 12.1 mg mL in 250 mM sucrose; Human intestinal cytosol (HIC),11.7 mg mL in 250 mM sucrose; Human kidney cytosol (HKC), 10.6 mg mL in 250 mM sucrose were purchased from Celsis (Chicago, IL).
منابع مشابه
Base-cleavable microarrays for the characterization of DNA and RNA oligonucleotides synthesized in situ by photolithography† †Electronic supplementary information (ESI) available: Experimental procedures for microarray fabrication, deprotection and cleavage as well as LC-MS conditions and spectra of all array eluates. See DOI: 10.1039/c4cc05771f Click here for additional data file.
Assessing synthesis efficiency, errors, failed deprotections, and chemical and enzymatic degradation of oligonucleotides on microarrays is essential for improving existing in situ synthesis methods, and for the development of new chemistries. We describe the use of LC-MS to analyse DNA and RNA oligonucleotides deprotected and cleaved under basic conditions from microarrays fabricated using ligh...
متن کاملA combination of polyunsaturated fatty acid, nonribosomal peptide and polyketide biosynthetic machinery is used to assemble the zeamine antibiotics† †Electronic supplementary information (ESI) available: Complete description of experimental details, and additional tables, figures, chromatograms, spectra, results from biological assays and LC-MS(/MS)- and NMR data for the prezeamines. See DOI: 10.1039/c4sc01927j Click here for additional data file.
Laboratory of Gene Technology, KU Leuv B-3001 Heverlee, Belgium. E-mail: rob.lavig 19 65; Tel: +32 (0) 16 37 95 24 Laboratory of Food Microbiology, KU Le Heverlee, Belgium Department of Chemistry, University of Wa [email protected]; Fax: +44 (0) 2476 5 Laboratory of Medicinal Chemistry, Rega In Minderbroedersstraat 10, B-3000 Leuven, B † Electronic supplementary information ( experimental d...
متن کاملElucidating Organ-Specific Metabolic Toxicity Chemistry from Electrochemiluminescent Enzyme/DNA Arrays and Bioreactor Bead-LC-MS/MS.
Human toxic responses are very often related to metabolism. Liver metabolism is traditionally studied, but other organs also convert chemicals and drugs to reactive metabolites leading to toxicity. When DNA damage is found, the effects are termed genotoxic. Here we describe a comprehensive new approach to evaluate chemical genotoxicity pathways from metabolites formed in-situ by a broad spectru...
متن کاملDivergent unprotected peptide macrocyclisation by palladium-mediated cysteine arylation† †Electronic supplementary information (ESI) available. See DOI: 10.1039/c6sc05454d Click here for additional data file.
1. General Experimental Details 2. Oxidative Addition Complexes and Synthetic Procedures 3. Peptide Synthesis and LC-MS Characterisation 4. Macrocyclisation Reactions and LC-MS Characterisation 5. C-CA Protein Expression 6. BioLayer Interferometry Binding 7. Lipophilicity, Phospholipid Affinity, Volume of Distribution, and Human Serum Albumin Binding Data 8. ICP-MS Analysis 9. References 10. NM...
متن کاملSystematic and site-specific analysis of N-sialoglycosylated proteins on the cell surface by integrating click chemistry and MS-based proteomics† †Electronic supplementary information (ESI) available: Supplementary text and references, six supplementary figures, and thirteen supplementary tables. See DOI: 10.1039/c5sc01124h Click here for additional data file. Click here for additional data file. Click here for additional data file. Click here for additional data file. Click here for additional data file. Click here for additional data file. Click here for additional data file. Click here for additional data file. Click here for additional data file. Click here for additional data file. Click here for additional data file. Click here for additional data file. Click here for additional data file. Click here for additional data file.
متن کامل